PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4179_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 436aa    MW: 47435.2 Da    PI: 5.4992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4179_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-12338383655
                                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                          +++Er RR ri +++ +L+e +P+     +k  + +++L +Av+YIk+Lq
  cra_locus_4179_iso_4_len_2835_ver_3 338 SIAERVRRTRISERMRKLQEAVPNM----DKQTNTSDMLDLAVDYIKDLQ 383
                                          689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.297332382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-15335392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.01E-12336387No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13337396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-12338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-8338383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MTGGLTRYRS APSSYFTSFL DATDNYVSSS VGGGGGGIGG MGGYVMDDLD QFLNRFMPNN  60
SGQRQEELNP GNNFSNSMSI QSHQTQFVGS MKQEQESMES QGQLNDFSSQ MMYQSQDSAE  120
IQAPAQRNQQ NSEASVDYSN RLLNSVNTNR FTPMKMATGG GNSNLIRYNS SPAGLFANIN  180
IENEYGAMRG MGNFGAGNNA NAEASFSSTS RFEGFSSGQS SSGLMPPISE MGTKGMGDQG  240
TSFEGQRNDG GGNYITGFPV SSWDDSGMLS ENLGKGLVGD NNNQQEXEGQ KDPAPTLLSR  300
HLSLPSTSVE FSAMETLMQD SVLCKIRAKR GCATHPRSIA ERVRRTRISE RMRKLQEAVP  360
NMDKQTNTSD MLDLAVDYIK DLQKQLKTLL DNGQSVLARM NESCGLKGQQ VGTCFFSAHL  420
RDIHKIVGIE DRKAKL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365809.11e-106PREDICTED: transcription factor bHLH128-like
RefseqXP_006365810.11e-106PREDICTED: transcription factor bHLH128-like
TrEMBLA0A068VCJ11e-152A0A068VCJ1_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000612841e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239